Generate CNV Regions (CNVR)

Generate CNVRs, summarize individual CNVR type, report frequency and type of CNVR

call_cnvr(clean_cnv, roh = NULL, chr_set = 29, folder = "cnvr")

Arguments

clean_cnv	a clean CNV file that was generated by the clean_cnv function
roh	ROH file from the clean_cnv function; only CNVPartition results will generate ROH results
chr_set	set the maximum number of chromosomes in the CNV list
folder	set the name of the output folder.

Value

Four or five tables: CNVR list, brief summary, and individual CNV and CNVR ID.