Title compare_interval compare cnvr, each input file should contain Chr, Start and End columns, the Chr column should be the number only, for example: 1 not chr1

Title compare_interval compare cnvr, each input file should contain Chr, Start and End columns, the Chr column should be the number only, for example: 1 not chr1

compare_interval(interval_1, interval_2, map = NULL)

Arguments

interval_1

the interval list with ARS1.2 coordinates, not limited on ARS once given the right map file
interval_2

the interval list with UMD3.1 coordinates, not limited on UMD once given the right map file
map

map file contains coordinates in both version of map. only need in comparison between the results from different versions. default file is generated from convert_map function

Value

overlap